Nopaline-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nopaline-Binding Periplasmic Protein
  Conformer 1
(PDB) 		4pow (A)
  Conformer 2
(PDB) 		4p0i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 126 0.34   31 - 114   238 - 279
2 123 0.64   115 - 237

Sequence


           ___________________________________________________________________________________113__________________________________ 
 4pow(A) : YKSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKTQVAIENLPLDNITPEQK 
         :                                                                                                                          
 4p0i(A) : *KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKTQVAIENLPLDNITPEQK 
           ___________________________________________________________________________________113__________________________________ 

           _____________________________________________________________________________________235________________________________ 
 4pow(A) : AELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTV 
         :                                                                                                                          
 4p0i(A) : AELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTV 
           _____________________________________________________________________________________235________________________________ 

           ________________                                                                                                         
 4pow(A) : QKLSQQWFGYDASP**                                                                                                         
         :                                                                                                                          
 4p0i(A) : QKLSQQWFGYDASPKQ                                                                                                         
           ________________                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		47.7
Translation
(A) 		1.8
Closure
(%) 		88.1
Bending Residues
( green ) 		  113 - 117
  235 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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