Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Phosphate Decarboxylase
  Conformer 1
(PDB) 		2yyt (A)
  Conformer 2
(PDB) 		2yyu (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 174 0.6   8 - 13   28 - 211
2 37 0.56   14 - 27   212 - 234

Sequence


           ______12_____________27_________________________________________________________________________________________________ 
 2yyt(A) : *PFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLT 
         :                                                                                                                          
 2yyu(A) : TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLT 
           ______12_____________27_________________________________________________________________________________________________ 

           _____________________________________________________________________________211_________________________                
 2yyt(A) : STDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVT---------vTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN                
         :                                                                                                                          
 2yyu(A) : STDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFADrVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN                
           _____________________________________________________________________________211_________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		0.0
Closure
(%) 		64.4
Bending Residues
( green ) 		  12 - 15
  27 - 30
  211 - 212
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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