Orotidine 5'-Monophosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Monophosphate Decarboxylase
  Conformer 1
(PDB) 		1eix (A)
  Conformer 2
(PDB) 		1l2u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 162 0.64   20 - 38   43 - 184   186 - 186
2 56 0.78   14 - 19   39 - 42   185 - 185   187 - 240

Sequence


           _______19________________37___42________________________________________________________________________________________ 
 1eix(A) : *VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVL 
         :                                                                                                                          
 1l2u(A) : AVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVL 
           _______19________________37___42________________________________________________________________________________________ 

           ___________________________________________________184___________________________________________________________        
 1eix(A) : TSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ*        
         :                                                                                                                          
 1l2u(A) : TSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ---------iMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQR        
           ___________________________________________________184___________________________________________________________        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.5
Translation
(A) 		0.3
Closure
(%) 		99.9
Bending Residues
( green ) 		  19 - 20
  37 - 40
  42 - 43
  184 - 187
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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