Polyamine Transport Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Polyamine Transport Protein
  Conformer 1
(PDB) 		3ttl (A)
  Conformer 2
(PDB) 		3ttn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 1.07   133 - 271   333 - 360
2 162 0.77   30 - 132   272 - 332

Sequence


           ______________________________________________________________________________________________________132_______________ 
 3ttl(A) : SLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEV 
         :                                                                                                                          
 3ttn(A) : SLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEV 
           ______________________________________________________________________________________________________132_______________ 

           ________________________________________________________________________________________________________________________ 
 3ttl(A) : LGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEG 
         :                                                                                                                          
 3ttn(A) : LGDQPIDSWAILFEPEN-kKLAKCGVAF-dSGDE-lPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEG 
           ________________________________________________________________________________________________________________________ 

           270_________________________________________________________330________________________________                          
 3ttl(A) : ANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIK                          
         :                                                                                                                          
 3ttn(A) : ANLWFDL-aIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPL-dKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIK                          
           270_________________________________________________________330________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.3
Translation
(A) 		-1.7
Closure
(%) 		98.6
Bending Residues
( green ) 		  132 - 133
  270 - 273
  330 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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