Putative Iron Compound-Binding Protein Of Abc Transporter Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Iron Compound-Binding Protein Of Abc Transporter Family
  Conformer 1
(PDB) 		3be5 (A)
  Conformer 2
(PDB) 		3be6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 0.47   23 - 24   34 - 36   65 - 65   74 - 83   115 - 118   132 - 135   149 - 288   293 - 310
2 106 0.53   25 - 33   37 - 64   66 - 73   84 - 114   119 - 131   136 - 148   289 - 292

Sequence


           ____24_______33_____________________________64_________________83____________________________114______________131_135___ 
 3be5(A) : EPVQVFTDDLGRKVTVPAHPKRIVSLHDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAIVAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLK 
         :                                                                                                                          
 3be6(B) : **VQVFTDDLGRKVTVPAHPKRIVSLHDLDITIPLIELGVPPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAIVAAKPDLIITEPTRNTPIERLEKIAPTVSIDHLK 
           ____24_______33_____________________________64_________________83____________________________114______________131_135___ 

           _______148______________________________________________________________________________________________________________ 
 3be5(A) : GGAPEIYRKLAELTGTQSQLAILERRYQAQINALKATLDSQKITVSVIQANQGKINVhSYHSLGRVLRDAGFRFPPLIESIPEGGRdVSAERLPELDADFVFATWRGDTGGKPQDELATe 
         :                                                                                                                          
 3be6(B) : GGAPEIYRKLAELTGTQSQLAILERRYQAQINALKATLDSQKITVSVIQANQGKINVhSYHSLGRVLRDAGFRFPPLIESIPEGGRdVSAERLPELDADFVFATWRGDTGGKPQDELATe 
           _______148______________________________________________________________________________________________________________ 

           _______________________288_292___________________                                                                        
 3be5(A) : KVpGWCQFLTACRSGRYVLISREEAISNSFASLGLaAQIQSQIAGRPLP                                                                        
         :                                                                                                                          
 3be6(B) : KVpGWCQFLTACRSGRYVLISREEAISNSFASLGLaAQIQSQIAGRPLP                                                                        
           _______________________288_292___________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		-0.2
Closure
(%) 		85.7
Bending Residues
( green ) 		  24 - 25
  33 - 37
  64 - 74
  83 - 84
  114 - 115
  117 - 119
  131 - 132
  135 - 136
  148 - 149
  288 - 289
  292 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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