Serine/threonine-Protein Phosphatase 2A 56 Kda Regulatory Subunit Gamma Isoform

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Serine/threonine-Protein Phosphatase 2A 56 Kda Regulatory Subunit Gamma Isoform
  Conformer 1
(PDB) 		2jak (A)
  Conformer 2
(PDB) 		2iae (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 0.8   72 - 230   265 - 266
2 131 1.03   231 - 264   267 - 363

Sequence


           ________________________________________________________________________________________________________________________ 
 2jak(A) : IRDVp-ADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP---------------pTLEAAWPHLQLVYEFFLRFLESPD 
         :                                                                                                                          
 2iae(B) : *RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPD 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________226___________________________________264_____ 
 2jak(A) : FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 
         :                                                                                                                          
 2iae(B) : FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 
           __________________________________________________________________________226___________________________________264_____ 

           ________________________________________________________________________________________________________________________ 
 2jak(A) : CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP***************** 
         :                                                                                                                          
 2iae(B) : CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 
           ________________________________________________________________________________________________________________________ 

           _________________                                                                                                        
 2jak(A) : *****************                                                                                                        
         :                                                                                                                          
 2iae(B) : IYNALKLFMEMNQKLFD                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.9
Translation
(A) 		-0.5
Closure
(%) 		77.6
Bending Residues
( green ) 		  226 - 231
  264 - 267
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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