DynDom - Protein Domain Motions

Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase
Conformer 1 (PDB)	1o9l (D)
Conformer 2 (PDB)	1ooy (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	307	0.42	45 - 88 93 - 133 139 - 160 163 - 280 314 - 327 334 - 337 340 - 392 424 - 424 427 - 435 465 - 465
2	143	0.48	89 - 92 134 - 138 161 - 162 305 - 313 328 - 333 338 - 339 393 - 423 425 - 426 436 - 464 466 - 518

Sequence

`_______________________________________________88_91_______________________________________133__138___________________16` `1o9l(D) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST` `:` `1ooy(B) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST` `_______________________________________________49_52________________________________________94___99___________________12` `0_____________________________________________________________________________________________________________________28` `1o9l(D) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI` `:` `1ooy(B) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI` `1_____________________________________________________________________________________________________________________24` `0_________________313___________327___333_337____________________________________________________392____________________` `1o9l(D) : ERLnVR----ERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLAN` `:` `1ooy(B) : ERLSVRKEvRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLAN` `1_________________274___________288___294_298____________________________________________________353____________________` `________423_________435__________________________464________________________________________________________` `1o9l(D) : WMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT` `:` `1ooy(B) : WMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT` `________384_________396__________________________425________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.0
Translation (A)	0.2
Closure (%)	98.0
Bending Residues ( green )	88 - 89 91 - 96 133 - 134 138 - 139 160 - 163 280 - 305 313 - 314 327 - 328 333 - 334 337 - 340 392 - 393 423 - 427 435 - 436 464 - 466
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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