Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny6 (A)
  Conformer 2
(PDB) 		1ny5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 0.82   158 - 165   176 - 308
2 100 0.71   140 - 157   166 - 175   309 - 380

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny6(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 
           ________________________________________________________________________________________________________________________ 

           __________________________________157_____165_______175_________________________________________________________________ 
 1ny6(A) : *****************EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
         :                                                                                                                          
 1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 
           __________________________________157_____165_______175_________________________________________________________________ 

           _________________________________________________________________308____________________________________________________ 
 1ny6(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
         :                                                                                                                          
 1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK 
           _________________________________________________________________308____________________________________________________ 

           ________________________                                                                                                 
 1ny6(A) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
         :                                                                                                                          
 1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.5
Translation
(A) 		0.2
Closure
(%) 		81.8
Bending Residues
( green ) 		  157 - 158
  165 - 166
  175 - 176
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download