Transcription Initiation Factor TfIId-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcription Initiation Factor TfIId-1
  Conformer 1
(PDB) 		1qna (A)
  Conformer 2
(PDB) 		1qnb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 98 0.18   19 - 26   64 - 64   68 - 68   83 - 90   117 - 196
2 80 0.19   27 - 63   65 - 67   69 - 82   91 - 116

Sequence


           _________26___________________________________63__67_____________82______90_______________________116___________________ 
 1qna(A) : *HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY 
         :                                                                                                                          
 1qnb(A) : KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY 
           _________26___________________________________63__67_____________82______90_______________________116___________________ 

           _______________________________________________________________                                                          
 1qna(A) : SHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI                                                          
         :                                                                                                                          
 1qnb(A) : SHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI                                                          
           _______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		0.0
Closure
(%) 		59.8
Bending Residues
( green ) 		  26 - 27
  63 - 65
  67 - 69
  82 - 83
  90 - 91
  116 - 117
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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