Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophanyl-Trna Synthetase
  Conformer 1
(PDB) 		1i6k (A)
  Conformer 2
(PDB) 		1m83 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 0.5   4 - 14   17 - 22   26 - 181   282 - 324
2 103 0.5   15 - 16   23 - 25   182 - 281

Sequence


           ________9_________20____________________________________________________________________________________________________ 
 1i6k(A) : *KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAW-lQCIVYIGELER-tQFKEKSAGKEAVSA 
         :                                                                                                                          
 1m83(A) : MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 
           ________9_________20____________________________________________________________________________________________________ 

           __________________________________________________________181___________________________________________________________ 
 1i6k(A) : GLLTYPPL-aADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARI-sLVDPTKK-sKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
         :                                                                                                                          
 1m83(A) : GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
           __________________________________________________________181___________________________________________________________ 

           ______________________________________281_______________________________________________                                 
 1i6k(A) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHW-eSEELDRVLDEGAEKANRVASE-vRK-eQA-gLGR**                                 
         :                                                                                                                          
 1m83(A) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRRR                                 
           ______________________________________281_______________________________________________                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		0.0
Closure
(%) 		99.0
Bending Residues
( green ) 		  9 - 17
  20 - 28
  181 - 183
  281 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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