Recombination-Associated Protein Rdgc

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Recombination-Associated Protein Rdgc
  Conformer 1
(PDB) 		2owl (A)
  Conformer 2
(PDB) 		2owl (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 220 0.71   4 - 29   44 - 69   123 - 299
2 64 1.53   31 - 42   70 - 122

Sequence


           ________________________29_________42_______________________69__________________________________________________122_____ 
 2owl(A) : LWFKNLvYRLSREISLRAEEeKQLASaFTPCGSQDaKgWVPPgSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTw 
         :                                                                                                                          
 2owl(B) : LWFKNLvYRLSREISLRAEEeKQLASaFTPCGSQDaKgWVPPgSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTw 
           ________________________29_________42_______________________69__________________________________________________122_____ 

           ________________________________________________________________________________________________________________________ 
 2owl(A) : IDTVNGLIvDCASAKKAEDTLALLRKSLGSLPVVPLSeNPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVcDDGSLKR 
         :                                                                                                                          
 2owl(B) : IDTVNGLIvDCASAKKAEDTLALLRKSLGSLPVVPLSeNPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVcDDGSLKR 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________                                                                        
 2owl(A) : LKFCDELRDQNEDIDREDFAQRFDADFILtGELAALIQNLIEGLGGEAQ                                                                        
         :                                                                                                                          
 2owl(B) : LKFCDELRDQNEDIDREDFAQRFDADFILtGELAALIQNLIEGLGGEAQ                                                                        
           _________________________________________________                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		-0.1
Closure
(%) 		43.8
Bending Residues
( green ) 		  29 - 31
  42 - 44
  69 - 70
  122 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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