Adenosylhomocysteinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenosylhomocysteinase
  Conformer 1
(PDB) 		5tow (A)
  Conformer 2
(PDB) 		3x2f (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 225 1.43   4 - 167   338 - 398
2 159 1.61   168 - 337

Sequence


           ________________________________________________________________________________________________________________________ 
 5tow(A) : NTGEMKINWVSRYMPLLNKIAEEYSREKPLSGFTVGMSIHLEAKTAYLAITLSKLGAKVVITGSNPLSTQDDVAEALRSKGITVYARRTHDESIYRENLMKVLDERPDFIIDDGGDLTVI 
         :                                                                                                                          
 3x2f(A) : NTGEMKINWVSRYMPLLNKIAEEYSREKPLSGFTVGMSIHLEAKTAYLAITLSKLGAKVVITGSNPLSTQDDVAEALRSKGITVYARRTHDESIYRENLMKVLDERPDFIIDDGGDLTVI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________163______________________________________________________________________________ 
 5tow(A) : SHTEREEVLENLKGVSEETTTGVRRLKALEETGKLRVPVIAVNDSKM------rYGTGQSTWDAIMRNTNLLVAGKNVVVAGYGWCGRGIALRAAGLGARVIVTEVDPVKAVEAIMDGFT 
         :                                                                                                                          
 3x2f(A) : SHTEREEVLENLKGVSEETTTGVRRLKALEETGKLRVPVIAVNDSKMKYLFDNRYGTGQSTWDAIMRNTNLLVAGKNVVVAGYGWCGRGIALRAAGLGARVIVTEVDPVKAVEAIMDGFT 
           _______________________________________164______________________________________________________________________________ 

           ____________________________________________________________________________________________336_________________________ 
 5tow(A) : VMPMKEAVKIADFVITASGNTDVLSKEDILSLKDGAVLANAGHFNVEIPVRVLEEIAVEKFEARPNVTGYTLENGKTVFLLAEGRLVN-----gHPVEIMDLSFALQIFAVLYLLENHRK 
         :                                                                                                                          
 3x2f(A) : VMPMKEAVKIADFVITASGNTDVLSKEDILSLKDGAVLANAGHFNVEIPVRVLEEIAVEKFEARPNVTGYTLENGKTVFLLAEGRLVNLAAGDGHPVEIMDLSFALQIFAVLYLLENHRK 
           ____________________________________________________________________________________________337_________________________ 

           ______________________________________________                                                                           
 5tow(A) : MSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYL*******                                                                           
         :                                                                                                                          
 3x2f(A) : MSPKVYMLPDEIDERVARMKLDSLGVKIDELTEKQRRYLRSWQHHH                                                                           
           ______________________________________________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		-4.1
Closure
(%) 		98.5
Bending Residues
( green ) 		  163 - 180
  336 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download