D(2) Dopamine Receptor, Endolysin Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D(2) Dopamine Receptor, Endolysin Chimera
  Conformer 1
(PDB)
6cm4 (A)
  Conformer 2
(PDB)
7jvr (R)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 234 2.65   37 - 222   384 - 425   430 - 439
2 22 1.33   366 - 383   426 - 429

Sequence


           ________________________________________________________________________________________________________________________ 
 6cm4(A) : *NYYATLLTLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASALNLCAISIDRYTAVAMP----tRYSSKRRVT 
         :                                                                                                                          
 7jvr(R) : YNYYATLLTLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVT 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________221____________________________________________________ 
 6cm4(A) : VMISIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR 
         :                                                                                                                          
 7jvr(R) : VMISIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKR--------------------------------------------------- 
           _________________________________________________________________221____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6cm4(A) : NTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYsQQKEKKATQM 
         :                                                                                                                          
 7jvr(R) : ------------------------------------------------------------------------------VN-----------------------------TqQKEKKATQM 
           ________________________________________________________________________________________________________________________ 

           ______383______________________________________424__429_____________                                                     
 6cm4(A) : AAIVAGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILH                                                     
         :                                                                                                                          
 7jvr(R) : LAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKIL*                                                     
           ______383______________________________________424__429_____________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
50.2
Translation
(A)
0.7
Closure
(%)
42.0
Bending Residues
( green )
  221 - 366
  383 - 385
  424 - 426
  429 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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