Galactose/glucose-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Galactose/glucose-Binding Protein
  Conformer 1
(PDB) 		1gcg (A)
  Conformer 2
(PDB) 		3ga5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 0.25   16 - 17   111 - 256   294 - 305
2 141 0.36   5 - 15   18 - 110   257 - 293

Sequence


           _____________15____________________________________________________________________________________________110__________ 
 1gcg(A) : ADTRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQG 
         :                                                                                                                          
 3ga5(A) : **TRIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQG 
           _____________15____________________________________________________________________________________________110__________ 

           ________________________________________________________________________________________________________________________ 
 1gcg(A) : DLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
         :                                                                                                                          
 3ga5(A) : DLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 
           ________________________________________________________________________________________________________________________ 

           _____________256__________________________________293________________                                                    
 1gcg(A) : ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFTQK                                                    
         :                                                                                                                          
 3ga5(A) : ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFT**                                                    
           _____________256__________________________________293________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.8
Translation
(A) 		0.3
Closure
(%) 		100.0
Bending Residues
( green ) 		  15 - 18
  110 - 114
  256 - 257
  293 - 294
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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