Intact Lactose Operon Repressor With Gratuitous Inducer Iptg

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Intact Lactose Operon Repressor With Gratuitous Inducer Iptg
  Conformer 1
(PDB) 		1lbh (A)
  Conformer 2
(PDB) 		1efa (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 0.67   74 - 81   162 - 293   319 - 324
2 112 0.85   67 - 73   82 - 161   294 - 318

Sequence


           ______________________________________________________________________73______81________________________________________ 
 1lbh(A) : ************************************************************LLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSG 
         :                                                                                                                          
 1efa(A) : KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSG 
           ______________________________________________________________________73______81________________________________________ 

           _____________________________________161________________________________________________________________________________ 
 1lbh(A) : LIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTA 
         :                                                                                                                          
 1efa(A) : LIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTA 
           _____________________________________161________________________________________________________________________________ 

           _______________________________________________291________________________318_______________________________________     
 1lbh(A) : MLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRLE     
         :                                                                                                                          
 1efa(A) : MLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTT****************************     
           _______________________________________________291________________________318_______________________________________     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.4
Translation
(A) 		0.9
Closure
(%) 		98.6
Bending Residues
( green ) 		  73 - 74
  81 - 82
  161 - 164
  291 - 296
  318 - 322
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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