Lipoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lipoprotein
  Conformer 1
(PDB) 		6cva (A)
  Conformer 2
(PDB) 		6oja (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 124 0.48   46 - 124   236 - 281
2 109 0.57   125 - 235

Sequence


           ______________________________________________________________________________123_______________________________________ 
 6cva(A) : *EIVFGTTVGDFGD-vKEQIQAELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLV-lD 
         :                                                                                                                          
 6oja(A) : KEIVFGTTVGDFGDMVKEQIQAELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLD 
           ______________________________________________________________________________123_______________________________________ 

           __________________________________________________________________231___________________________________________________ 
 6cva(A) : ELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAISSG-kLTEALFQEPSFAYVAWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYKSPAAWN 
         :                                                                                                                          
 6oja(A) : ELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYKSPAAWN 
           __________________________________________________________________231___________________________________________________ 

           __                                                                                                                       
 6cva(A) : EG                                                                                                                       
         :                                                                                                                          
 6oja(A) : E*                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		41.5
Translation
(A) 		0.2
Closure
(%) 		93.6
Bending Residues
( green ) 		  123 - 125
  231 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download