Loc - Lambda 1 Type Light-Chain Dimer

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Loc - Lambda 1 Type Light-Chain Dimer
  Conformer 1
(PDB) 		1bjm (A)
  Conformer 2
(PDB) 		1bjm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 107 1.44   3 - 109
2 104 0.94   110 - 213

Sequence


           __________________________________________________________________________________________________________109___________ 
 1bjm(A) : XSVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVFGTGTKVTVLGQPKANPTVT 
         :                                                                                                                          
 1bjm(B) : SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVFGTGTKVTVLGQPKANPTVTL 
           __________________________________________________________________________________________________________110___________ 

           ________________________________________________________________________________________________                         
 1bjm(A) : LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS                         
         :                                                                                                                          
 1bjm(B) : FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS*                         
           ________________________________________________________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		164.3
Translation
(A) 		1.0
Closure
(%) 		91.9
Bending Residues
( green ) 		  109 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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