Multidrug Transporter Mdfa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Multidrug Transporter Mdfa
  Conformer 1
(PDB) 		4zow (A)
  Conformer 2
(PDB) 		6gv1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 194 0.49   205 - 398
2 189 0.88   16 - 204

Sequence


           ________________________________________________________________________________________________________________________ 
 4zow(A) : RLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAA 
         :                                                                                                                          
 6gv1(A) : ****QALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________204_____________________________________________ 
 4zow(A) : IRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITG 
         :                                                                                                                          
 6gv1(A) : IQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITG 
           ________________________________________________________________________204_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4zow(A) : EQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGMLQMLIFTVGIEISK 
         :                                                                                                                          
 6gv1(A) : EQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGMLQMLIFTVGIEISK 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 4zow(A) : HAWLNGGNGLFNLFNLVNGILWLSLMVIFLK                                                                                          
         :                                                                                                                          
 6gv1(A) : HAWLNGGNGLFNLFNLVNGILWLSLMVIFLK                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		33.4
Translation
(A) 		-0.7
Closure
(%) 		98.1
Bending Residues
( green ) 		  204 - 211
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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