DynDom - Protein Domain Motions

Myosin Heavy Chain, Striated Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Myosin Heavy Chain, Striated Muscle
Conformer 1 (PDB)	1qvi (A)
Conformer 2 (PDB)	1kk7 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	79	1.43	493 - 509 707 - 772
2	646	2.85	8 - 492 510 - 703
3	63	1.25	773 - 835

Sequence

`________________________________________________________________________________________________________________________` `1qvi(A) : *SDPDFQYLAVDRKKLMKEQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVN` `:` `1kk7(A) : FSDPDFQYLAVDRKKLMK---aAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVN` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1qvi(A) : PYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVkE-------GSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFI` `:` `1kk7(A) : PYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKeEASDKgSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1qvi(A) : RIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRP` `:` `1kk7(A) : RIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFK--p` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1qvi(A) : REEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQF` `:` `1kk7(A) : REEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKV--eMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKA-rNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQF` `________________________________________________________________________________________________________________________` `__492___________506_____________________________________________________________________________________________________` `1qvi(A) : FNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVV` `:` `1kk7(A) : FNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVV` `__492___________506_____________________________________________________________________________________________________` `________________________________________________________________________696_____________________________________________` `1qvi(A) : ALLGASKEPLVAELFKAPEEfQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPfVDGKTVSEKIL` `:` `1kk7(A) : ALLGASKEPLVAELFKAPEE-qTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIP--dGKTVSEKIL` `________________________________________________________________________696_____________________________________________` `__________________________772_________________________________________________________________` `1qvi(A) : AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL` `:` `1kk7(A) : AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL` `__________________________772_________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	70.6
Translation (A)	-0.4
Closure (%)	23.8
Bending Residues ( green )	492 - 494 506 - 515 696 - 707
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	20.5
Translation (A)	-0.6
Closure (%)	31.2
Bending Residues ( green )	772 - 774
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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