Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Phosphate Decarboxylase
  Conformer 1
(PDB) 		1l2u (B)
  Conformer 2
(PDB) 		1eix (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 0.74   23 - 36   44 - 47   52 - 180
2 71 0.97   14 - 22   37 - 43   48 - 51   181 - 240

Sequence


           _________22____________36_____43__47__51________________________________________________________________________________ 
 1l2u(B) : VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLT 
         :                                                                                                                          
 1eix(D) : VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLT 
           _________22____________36_____43__47__51________________________________________________________________________________ 

           ______________________________________________180_______________________________________________________________         
 1l2u(B) : SMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ---------iMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQR         
         :                                                                                                                          
 1eix(D) : SMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ*         
           ______________________________________________180_______________________________________________________________         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.1
Translation
(A) 		0.0
Closure
(%) 		99.5
Bending Residues
( green ) 		  22 - 23
  36 - 37
  43 - 44
  47 - 48
  51 - 52
  180 - 181
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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