Peroxisomal Targeting Signal 1 Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peroxisomal Targeting Signal 1 Receptor
  Conformer 1
(PDB) 		2j9q (A)
  Conformer 2
(PDB) 		2c0m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 0.73   323 - 486   490 - 492   495 - 501
2 136 1.27   487 - 489   493 - 494   502 - 637

Sequence


           ________________________________________________________________________________________________________________________ 
 2j9q(A) : GMGLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 
         :                                                                                                                          
 2c0m(B) : *********DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 
           ________________________________________________________________________________________________________________________ 

           _____________________________485_489____________________________________________________________________________________ 
 2j9q(A) : YTPAYAHLVTP-sLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 
         :                                                                                                                          
 2c0m(B) : YTPAYAHLVTPdSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 
           _____________________________448_452____________________________________________________________________________________ 

           __________________________________________________________________                                                       
 2j9q(A) : EAVEHFLEALNMQRKSRG-----gAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ                                                       
         :                                                                                                                          
 2c0m(B) : EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ                                                       
           __________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.1
Translation
(A) 		0.1
Closure
(%) 		1.5
Bending Residues
( green ) 		  485 - 487
  489 - 490
  492 - 502
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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