Restriction Endonuclease EcorII

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Restriction Endonuclease EcorII
  Conformer 1
(PDB) 		1na6 (A)
  Conformer 2
(PDB) 		3hqg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 120 1.06   206 - 225   270 - 396
2 65 1.24   185 - 205   226 - 269

Sequence


           ________________________________________________________________________________________________________________________ 
 1na6(A) : SVFHNWLLEIACENYFVYIKRLSANDTGATqVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDE 
         :                                                                                                                          
 3hqg(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________203___________________225_____________________ 
 1na6(A) : QGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHY-----dPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFG 
         :                                                                                                                          
 3hqg(A) : ********************************************************YILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFG 
           __________________________________________________________________________203___________________225_____________________ 

           ________________265_____________________________________________________________________________________________________ 
 1na6(A) : SVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQA-------pDFLFPSAGAYH----p---lRMLAVKTTCKDRWRQILN--------hLFTLQEGVSLAQYREMRESGV 
         :                                                                                                                          
 3hqg(A) : SVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIHQVHLFTLQEGVSLAQYREMRESGV 
           ________________265_____________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 1na6(A) : RLVVPSSLHKKYPEAVRAELMTLGAFIAELTG******                                                                                   
         :                                                                                                                          
 3hqg(A) : RLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		27.7
Translation
(A) 		0.2
Closure
(%) 		99.1
Bending Residues
( green ) 		  203 - 207
  225 - 226
  265 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download