Sensor Protein Cpxa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sensor Protein Cpxa
  Conformer 1
(PDB) 		4biv (A)
  Conformer 2
(PDB) 		4biv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 55 1.17   240 - 296
2 47 0.32   190 - 239
3 154 1.67   300 - 454

Sequence


           ___________________________________________234_________________________________________________289______________________ 
 4biv(A) : KPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQvTALERtSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSiNDLLVsRNQQKNALVSETIKANQ 
         :                                                                                                                          
 4biv(B) : KPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQvTALERtSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSiNDLLVsRNQQKNALVSETIKANQ 
           ___________________________________________234_________________________________________________289______________________ 

           ________________________________________________________________________________________________________________________ 
 4biv(A) : LWSEVLDNAAFEAEQgKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRG 
         :                                                                                                                          
 4biv(B) : LWSEVLDNAAFEAEQgKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRG 
           ________________________________________________________________________________________________________________________ 

           _______________________                                                                                                  
 4biv(A) : WVKAEDSPLGGLRLVIWLPLYKR                                                                                                  
         :                                                                                                                          
 4biv(B) : WVKAEDSPLGGLRLVIWLPLYKR                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		52.5
Translation
(A) 		-2.6
Closure
(%) 		98.0
Bending Residues
( green ) 		  234 - 244
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		102.8
Translation
(A) 		9.6
Closure
(%) 		76.2
Bending Residues
( green ) 		  289 - 306
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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