Shikimate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Shikimate Dehydrogenase
  Conformer 1
(PDB) 		3don (A)
  Conformer 2
(PDB) 		3doo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 0.32   3 - 107   119 - 120   129 - 134   143 - 144   235 - 259
2 114 0.46   108 - 118   121 - 128   135 - 142   145 - 234   260 - 265

Sequence


           ________________________________________________________________________________________________________107________118__ 
 3don(A) : MKFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 
         :                                                                                                                          
 3doo(A) : MKFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 
           ________________________________________________________________________________________________________107________118__ 

           _____128__133______142__________________________________________________________________________________234_____________ 
 3don(A) : LILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPdSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIW 
         :                                                                                                                          
 3doo(A) : LILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTP--vISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIW 
           _____128__133______142__________________________________________________________________________________234_____________ 

           _________259____________                                                                                                 
 3don(A) : TNLEPDIKAMKNIVIQKLKGELLE                                                                                                 
         :                                                                                                                          
 3doo(A) : TNLEPDIKAMKNIVIQKLKG****                                                                                                 
           _________259____________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.1
Translation
(A) 		0.0
Closure
(%) 		35.7
Bending Residues
( green ) 		  107 - 108
  118 - 121
  128 - 129
  133 - 135
  142 - 145
  234 - 235
  259 - 260
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download