Solute Carrier Family 2, Facilitated Glucose Transporter Member 5

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Solute Carrier Family 2, Facilitated Glucose Transporter Member 5
  Conformer 1
(PDB) 		4ybq (A)
  Conformer 2
(PDB) 		4yb9 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 1.95   27 - 28   31 - 31   163 - 170   263 - 459
2 196 2.93   29 - 30   32 - 162   171 - 262

Sequence


           ____________________28__________________________________________________________________________________________________ 
 4ybq(A) : EKTGKLTLVLALATFLAAFGSSFQYGYNVAAV----------------------iESFTLTLLWSLTVSMFPFGGFIGSLMVGFLVNNLGRKGALLFNNIFSILPAILMGCSKIAKSFEI 
         :                                                                                                                          
 4yb9(D) : ***********LATLIAAFGSSFQYGYNVAAINSPSEFMKDFYAYTYYDRVGEYMNEFYLTLLWSVTVSMFPFGGFLGSLMVGPLVNNLGRKGTLLFNNIFSIVPALLMGFSELAKSFEM 
           ____________________29__________________________________________________________________________________________________ 

           _________________________________162_____170____________________________________________________________________________ 
 4ybq(A) : IIASRLLVGICAGISSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQLFGLRSVLASEEGWPILLGLTGVPAGLQLLLLPFFPESPRYLLIQKKNESAAEKALQTLRGWKDVDMEM 
         :                                                                                                                          
 4yb9(D) : IIVARVLVGICAGLSSNVVPMYLGELAPKNWRGALGVVPQLFITIGILVAQIFGLRSLLANEEGWPILLGLTGIPAVLQLLFLPFFPESPRYLLIQKKDEAAAKSALRRL-------aEI 
           _________________________________163_____171____________________________________________________________________________ 

           _____________262________________________________________________________________________________________________________ 
 4ybq(A) : EEIRKEDEAEKAAGFISVWKLFRMQSLRWQLISTIVLMAGQQLSGVNAIYYYADQIYLSAGVKSNDVQYVTAGTGAVNVFMTMVTVFVVELWGRRNLLLIGFSTCLTACIVLTVALALQN 
         :                                                                                                                          
 4yb9(D) : EEILEEDRAEKAVGFISVLKLFKMRSLRWQVISIIVLMAGQQLSGVNAIYYYADQIYLSAGVNEDDVQYVTAGTGAVNVLITVCAIFVVELMGRRFLLLLGFSVCFTACCVLTGALALQD 
           _____________263________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________________       
 4ybq(A) : TISWMPYVSIVCVIVYVIGHAVGPSPIPALFITEIFLQSSRPSAYMIGGSVHWLSNFIVGLIFPFIQVGLGPYSFIIFAIICLLTTIYIFMVVPETKGRTFVEINQIFAKKNKV       
         :                                                                                                                          
 4yb9(D) : VISWMPYVSIACVISYVIGHALGPSPIPALLVTEIFLQSSRPAAYMVAGTVHWLSNFTVGLVFPFIQVGLGAYSFVIFAVICLLTTVYIFLIIPE*******************       
           __________________________________________________________________________________________________________________       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.7
Translation
(A) 		0.6
Closure
(%) 		97.8
Bending Residues
( green ) 		  28 - 32
  162 - 163
  170 - 171
  262 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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