Tarm

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tarm
  Conformer 1
(PDB) 		4x7r (A)
  Conformer 2
(PDB) 		4x7p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 163 0.61   3 - 72   209 - 250   265 - 305   406 - 413   486 - 487
2 66 0.36   79 - 98   132 - 175   181 - 182
3 23 0.34   176 - 179   190 - 208
4 186 0.51   251 - 264   306 - 405   414 - 485
5 23 0.58   99 - 121

Sequence


           ______________________________________________________________________72_______________________97_____________________12 
 4x7r(A) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTRTYI 
         :                                                                                                                          
 4x7p(A) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTGTYI 
           ______________________________________________________________________72_______________________97_____________________12 

           1___________________________________________________175_179__________________________208________________________________ 
 4x7r(A) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK 
         :                                                                                                                          
 4x7p(A) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK 
           1___________________________________________________175_179__________________________208________________________________ 

           _______250___________264______________________________________305_______________________________________________________ 
 4x7r(A) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV 
         :                                                                                                                          
 4x7p(A) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV 
           _______250___________264______________________________________305_______________________________________________________ 

           ________________________________________403______412_________________________________________________________________480 
 4x7r(A) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST 
         :                                                                                                                          
 4x7p(A) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST 
           ________________________________________403______412_________________________________________________________________480 

           _____________                                                                                                            
 4x7r(A) : ESILEKWLNLFNS                                                                                                            
         :                                                                                                                          
 4x7p(A) : ESILEKWLNLFNS                                                                                                            
           _____________                                                                                                            

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 9.2 -0.5 2.0   72 - 83 Bending Region Analysis
1 3 10.6 -0.1 72.2   208 - 209 Bending Region Analysis
1 4 8.9 0.3 88.5   250 - 251   264 - 265   305 - 306   403 - 406   412 - 414   480 - 487 Bending Region Analysis
2 5 6.3 -0.2 27.2   97 - 99   121 - 132 Bending Region Analysis
2 3 6.4 -0.1 90.7   175 - 176   179 - 190 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 5

Conformer 2 Contact:
Residue 5 ———› Residue 2

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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