Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny5 (A)
  Conformer 2
(PDB) 		4l4u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 248 1.23   125 - 125   128 - 129   132 - 132   135 - 382
2 128 1.05   3 - 124   126 - 127   130 - 131   133 - 134

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny5(A) : ********MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 
         :                                                                                                                          
 4l4u(A) : GLVPRGSHMNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 
           ________________________________________________________________________________________________________________________ 

           _________124____________________________________________________________________________________________________________ 
 1ny5(A) : NKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADG 
         :                                                                                                                          
 4l4u(A) : NKAIEHRKLRKENELLRREKDLKEe-YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKSSDRSKEPFVALNVASIPRDIFEAELFGYEKGA---aVSSKEGFFELADG 
           _________124____________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ny5(A) : GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW 
         :                                                                                                                          
 4l4u(A) : GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW 
           ________________________________________________________________________________________________________________________ 

           ________________________________                                                                                         
 1ny5(A) : YGNVRELKNVIERAVLFSEGKFIDRGELSCLV                                                                                         
         :                                                                                                                          
 4l4u(A) : YGNVRELKNVIERAVLFSEGKFIDRGELSCLV                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		2.8
Closure
(%) 		89.5
Bending Residues
( green ) 		  124 - 140
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download