Translation Initiation Factor Eif-2b, Delta Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Translation Initiation Factor Eif-2b, Delta Subunit
  Conformer 1
(PDB) 		3a11 (A)
  Conformer 2
(PDB) 		3vm6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 202 1.73   112 - 313
2 114 0.78   5 - 111   314 - 320

Sequence


           ___________________________________________________________________________________________________________111__________ 
 3a11(A) : *VVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAK 
         :                                                                                                                          
 3vm6(A) : AVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAK 
           ___________________________________________________________________________________________________________111__________ 

           ________________________________________________________________________________________________________________________ 
 3a11(A) : RIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHP 
         :                                                                                                                          
 3vm6(A) : RIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFHP 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________310____________                                        
 3a11(A) : ETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED                                        
         :                                                                                                                          
 3vm6(A) : ETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPWED                                        
           __________________________________________________________________310____________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.1
Translation
(A) 		0.2
Closure
(%) 		99.8
Bending Residues
( green ) 		  111 - 112
  310 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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