Tropomyosin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tropomyosin
  Conformer 1
(PDB) 		1c1g (A)
  Conformer 2
(PDB) 		1c1g (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 83 1.91   140 - 220   222 - 223
2 137 3.24   3 - 139
3 57 2.29   221 - 221   224 - 279

Sequence


           ________________________________________________________________________________________________________________________ 
 1c1g(A) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
         :                                                                                                                          
 1c1g(B) : MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 
           ________________________________________________________________________________________________________________________ 

           ________________139______________________________________________________________________________220____________________ 
 1c1g(A) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
         :                                                                                                                          
 1c1g(B) : DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 
           ________________423______________________________________________________________________________504____________________ 

           ____________________________________________                                                                             
 1c1g(A) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
         :                                                                                                                          
 1c1g(B) : FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.8
Translation
(A) 		3.8
Closure
(%) 		83.2
Bending Residues
( green ) 		  139 - 141
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		27.9
Translation
(A) 		5.1
Closure
(%) 		81.9
Bending Residues
( green ) 		  220 - 224
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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