Tryptophanyl Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophanyl Trna Synthetase
  Conformer 1
(PDB) 		1d2r (A)
  Conformer 2
(PDB) 		1mau (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 190 0.94   3 - 14   35 - 174   287 - 324
2 132 1.19   15 - 34   175 - 286

Sequence


           ____________14__________________34______________________________________________________________________________________ 
 1d2r(A) : MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGAAAAAA 
         :                                                                                                                          
 1mau(A) : MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 
           ____________14__________________34______________________________________________________________________________________ 

           ___________________________________________________174__________________________________________________________________ 
 1d2r(A) : GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
         :                                                                                                                          
 1mau(A) : GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 
           ___________________________________________________174__________________________________________________________________ 

           ___________________________________________286__________________________________________                                 
 1d2r(A) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR**                                 
         :                                                                                                                          
 1mau(A) : LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRRR                                 
           ___________________________________________286__________________________________________                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.2
Translation
(A) 		0.1
Closure
(%) 		90.6
Bending Residues
( green ) 		  14 - 15
  34 - 35
  174 - 175
  286 - 287
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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