DynDom - Protein Domain Motions

Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Galactose 4-Epimerase
Conformer 1 (PDB)	1hzj (B)
Conformer 2 (PDB)	1i3k (B)
Window Length	9
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	205	0.64	6 - 141 143 - 186 190 - 192 251 - 255 260 - 268 311 - 313 336 - 340
2	130	0.39	142 - 142 187 - 189 193 - 250 256 - 259 269 - 310 314 - 335

Sequence

`________________________________________________________________________________________________________________________` `1hzj(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA` `:` `1i3k(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA` `________________________________________________________________________________________________________________________` `_________________141__________________________________________186___192_________________________________________________` `1hzj(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `:` `1i3k(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `_________________141__________________________________________186___192_________________________________________________` `______250__255_259______268_______________________________________310______________________335___________` `1hzj(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT` `:` `1i3k(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT` `______250__255_259______268_______________________________________310______________________335___________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.0
Translation (A)	-0.3
Closure (%)	94.8
Bending Residues ( green )	141 - 143 186 - 187 189 - 190 192 - 193 250 - 251 255 - 256 259 - 260 268 - 269 310 - 311 313 - 314 335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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