Udp-N-Acetylglucosamine--N-Acetylmuramyl-(pentapeptide) Pyrophosphoryl-Undecaprenol N-Acetylglucosamine Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine--N-Acetylmuramyl-(pentapeptide) Pyrophosphoryl-Undecaprenol N-Acetylglucosamine Transferase
  Conformer 1
(PDB) 		1nlm (A)
  Conformer 2
(PDB) 		1f0k (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.62   161 - 266   271 - 342
2 168 1.13   9 - 160   267 - 270   343 - 354

Sequence


           ________________________________________________________________________________________________________________________ 
 1nlm(A) : KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 
         :                                                                                                                          
 1f0k(B) : KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 
           ________________________________________________________________________________________________________________________ 

           _______________________________160______________________________________________________________________________________ 
 1nlm(A) : QNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFID 
         :                                                                                                                          
 1f0k(B) : QNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFID 
           _______________________________160______________________________________________________________________________________ 

           _________________266_270_____________________________________________________________________342_______________          
 1nlm(A) : DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA*          
         :                                                                                                                          
 1f0k(B) : DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARAL          
           _________________266_270_____________________________________________________________________342_______________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.8
Translation
(A) 		0.0
Closure
(%) 		17.4
Bending Residues
( green ) 		  160 - 161
  266 - 267
  270 - 271
  342 - 343
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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