DynDom - Protein Domain Motions

Wd Repeat-Containing Protein 48

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Wd Repeat-Containing Protein 48
Conformer 1 (PDB)	5k1a (B)
Conformer 2 (PDB)	5k1a (D)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	329	0.8	22 - 362 365 - 365 421 - 425
2	259	0.75	16 - 21 363 - 364 366 - 420 426 - 673

Sequence

`_______21_______________________________________________________________________________________________________________` `5k1a(B) : *KVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELV` `:` `5k1a(D) : RKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELV` `_______21_______________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `5k1a(B) : ASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHD` `:` `5k1a(D) : ASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHD` `________________________________________________________________________________________________________________________` `_________________________________________________________________________________________362____________________________` `5k1a(B) : EGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGtPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVL` `:` `5k1a(D) : EGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGtPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVL` `_________________________________________________________________________________________362____________________________` `___________________________420__425_____________________________________________________________________________________` `5k1a(B) : KACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSP----pKLNLGGLLLQALLEYWPRTHVNPMvQKGNGYFQVPPHTPVIFGEAGGRTLFR` `:` `5k1a(D) : KACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVNPMvQKGNGYFQVPPHTPVIFGEAGGRTLFR` `___________________________420__425_____________________________________________________________________________________` `________________________________________________________________________________________________________________________` `5k1a(B) : LLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHAkKDRLSASDMLQVRKVMEHVYEKIINLeDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQK` `:` `5k1a(D) : LLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHAkKDRLSASDMLQVRKVMEHVYEKII---dIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQK` `________________________________________________________________________________________________________________________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	7.6
Translation (A)	0.5
Closure (%)	82.0
Bending Residues ( green )	21 - 22 362 - 366 420 - 421 425 - 426
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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