Protein (Iron-Utilization Periplasmic Protein)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Iron-Utilization Periplasmic Protein)
  Conformer 1
(PDB) 		1mrp (A)
  Conformer 2
(PDB) 		1nnf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.89   84 - 87   102 - 225   277 - 306
2 146 0.45   3 - 83   88 - 101   226 - 276

Sequence


           _______________________________________________________________________________81_________________101___________________ 
 1mrp(A) : DITVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
         :                                                                                                                          
 1nnf(A) : DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
           _______________________________________________________________________________81_________________101___________________ 

           ______________________________________________________________________________________________________225_______________ 
 1mrp(A) : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
         :                                                                                                                          
 1nnf(A) : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
           ______________________________________________________________________________________________________225_______________ 

           ________________________________275__________________________________                                                    
 1mrp(A) : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGLK                                                    
         :                                                                                                                          
 1nnf(A) : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGL*                                                    
           ________________________________275__________________________________                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.9
Translation
(A) 		0.2
Closure
(%) 		79.0
Bending Residues
( green ) 		  81 - 88
  101 - 102
  225 - 229
  275 - 280
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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