Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB) 		2anj (A)
  Conformer 2
(PDB) 		1mm6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 131 0.47   4 - 88   91 - 105   221 - 251
2 126 0.47   89 - 90   106 - 220   252 - 260

Sequence


           ______________________________________________________________________________________88______________105_______________ 
 2anj(A) : GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
         :                                                                                                                          
 1mm6(A) : *ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
           ______________________________________________________________________________________88______________105_______________ 

           _________________________________________________________________________________________________220____________________ 
 2anj(A) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLK 
         :                                                                                                                          
 1mm6(A) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLK 
           _________________________________________________________________________________________________220____________________ 

           ________251___________                                                                                                   
 2anj(A) : LNEQGLLDKLKNKWWYDKGECG                                                                                                   
         :                                                                                                                          
 1mm6(A) : LNEQGLLDKLKNKWWYDKGECG                                                                                                   
           ________251___________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.0
Closure
(%) 		98.3
Bending Residues
( green ) 		  88 - 91
  105 - 106
  220 - 221
  251 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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