Hth-Type Transcriptional Regulator Benm

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hth-Type Transcriptional Regulator Benm
  Conformer 1
(PDB) 		2h99 (A)
  Conformer 2
(PDB) 		2f78 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 114 0.45   97 - 104   162 - 267
2 92 0.72   92 - 96   105 - 161   268 - 297

Sequence


           ________96____103_______________________________________________________161_____________________________________________ 
 2h99(A) : ***KTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHSLLRNERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTH 
         :                                                                                                                          
 2f78(A) : SVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKRTLLRNERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTH 
           ________96____103_______________________________________________________161_____________________________________________ 

           __________________________________________________________267_________________________________________                   
 2h99(A) : VMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPASTQSIQLFNLSYVPLLDPDAITPIYIAVRNMEESTYIYSLYETIRQIYAYEGFTEPPNW****                   
         :                                                                                                                          
 2f78(A) : VMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPASTQSIQLFNLSYVPLLDPDAITPIYIAVRNMEESTYIYSLYETIRQIYAYEGFTEPPNWLEHH                   
           __________________________________________________________267_________________________________________                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.8
Translation
(A) 		0.5
Closure
(%) 		96.8
Bending Residues
( green ) 		  96 - 101
  103 - 105
  161 - 162
  267 - 268
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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