L-Asparaginase I

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Asparaginase I
  Conformer 1
(PDB) 		2p2d (A)
  Conformer 2
(PDB) 		2him (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 260 1.11   9 - 9   48 - 113   132 - 330
2 51 1.02   10 - 47   114 - 131

Sequence


           _______9____________________________________47_______________________________________________________________113________ 
 2p2d(A) : QKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPL 
         :                                                                                                                          
 2him(A) : *KKSIYVAYTGGTIGMQR-----iPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPL 
           _______9____________________________________47_______________________________________________________________113________ 

           _______131______________________________________________________________________________________________________________ 
 2p2d(A) : AELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILRS 
         :                                                                                                                          
 2him(A) : AELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTAKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILRS 
           _______131______________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________                              
 2p2d(A) : YGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNM-nALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTPD                              
         :                                                                                                                          
 2him(A) : YGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMgNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTP*                              
           ___________________________________________________________________________________________                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.4
Translation
(A) 		-0.1
Closure
(%) 		99.6
Bending Residues
( green ) 		  9 - 11
  47 - 48
  113 - 114
  131 - 132
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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