Methylene Tetrahydromethanopterin Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Methylene Tetrahydromethanopterin Dehydrogenase
  Conformer 1
(PDB) 		1lu9 (A)
  Conformer 2
(PDB) 		1lua (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 0.47   65 - 70   96 - 99   104 - 250   284 - 286
2 123 0.24   4 - 64   71 - 95   100 - 103   251 - 283

Sequence


           _____________________________________________________________64____70_______________________95_____103__________________ 
 1lu9(A) : SKKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGK 
         :                                                                                                                          
 1lua(A) : SKKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGK 
           _____________________________________________________________64____70_______________________95_____103__________________ 

           ________________________________________________________________________________________________________________________ 
 1lu9(A) : KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEY 
         :                                                                                                                          
 1lua(A) : KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEY 
           ________________________________________________________________________________________________________________________ 

           ______250______________________________283_____                                                                          
 1lu9(A) : GGKRAFGALGIGGLKLKLHRACIAKLFESSEGVFDAEEIYKLAKEMA                                                                          
         :                                                                                                                          
 1lua(A) : GGKRAFGALGIGGLKLKLHRACIAKLFESSEGVFDAEEIYKLAKEMA                                                                          
           ______250______________________________283_____                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.5
Translation
(A) 		0.0
Closure
(%) 		76.8
Bending Residues
( green ) 		  64 - 65
  70 - 71
  95 - 101
  103 - 104
  250 - 251
  283 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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