Nuclear Valosin-Containing Protein-Like

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nuclear Valosin-Containing Protein-Like
  Conformer 1
(PDB) 		2x8a (A)
  Conformer 2
(PDB) 		1s3s (C)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 2.66   587 - 746
2 56 1.87   747 - 807

Sequence


           ________________________________________________________________________________________________________________________ 
 2x8a(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 1s3s(C) : RPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2x8a(A) : ********************************************************************IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 
         :                                                                                                                          
 1s3s(C) : AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVEL----PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________________________745_________ 
 2x8a(A) : VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPsV---------RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 
         :                                                                                                                          
 1s3s(C) : VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 
           ____________________________________________________________________________________________________________368_________ 

           ______________________________________________________________________________________                                   
 2x8a(A) : LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMlKVSHKHFEEAFKKVRSSI************                                   
         :                                                                                                                          
 1s3s(C) : LEILQIHTKNM---KLADDVDLEQVANETHG--HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ                                   
           ______________________________________________________________________________________                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		44.8
Translation
(A) 		-0.8
Closure
(%) 		75.1
Bending Residues
( green ) 		  745 - 747
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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