Paraspeckle Component 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Paraspeckle Component 1
  Conformer 1
(PDB) 		3sde (A)
  Conformer 2
(PDB) 		3sde (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.96   153 - 310
2 77 0.92   76 - 152

Sequence


           ____________________________________________________________________________________152_________________________________ 
 3sde(A) : DIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKA 
         :                                                                                                                          
 3sde(B) : ********GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERA 
           ____________________________________________________________________________________144_________________________________ 

           ________________________________________________________________________________________________________________________ 
 3sde(A) : VVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLE 
         :                                                                                                                          
 3sde(B) : VVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLE 
           ________________________________________________________________________________________________________________________ 

           _______________                                                                                                          
 3sde(A) : AEMEAARHEHQLMLM                                                                                                          
         :                                                                                                                          
 3sde(B) : MEMEAAR********                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.1
Translation
(A) 		0.6
Closure
(%) 		83.7
Bending Residues
( green ) 		  152 - 156
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download