Potassium Channel Related Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Potassium Channel Related Protein
  Conformer 1
(PDB) 		1lnq (A)
  Conformer 2
(PDB) 		2fy8 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 139 1.39   117 - 255
2 72 0.75   263 - 334

Sequence


           ________________________________________________________________________________________________________________________ 
 1lnq(A) : PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLrHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS 
         :                                                                                                                          
 2fy8(E) : *******************************************************************************SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________255____________________ 
 1lnq(A) : GANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKL 
         :                                                                                                                          
 2fy8(E) : GANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKL 
           _________________________________________________________________________________________________255____________________ 

           _____________________________________________________________                                                            
 1lnq(A) : EGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                            
         :                                                                                                                          
 2fy8(E) : EGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                            
           _____________________________________________________________                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.5
Translation
(A) 		0.0
Closure
(%) 		25.7
Bending Residues
( green ) 		  255 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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