DynDom - Protein Domain Motions

Pyruvate Kinase Isozymes M1/m2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Pyruvate Kinase Isozymes M1/m2
Conformer 1 (PDB)	3srh (A)
Conformer 2 (PDB)	6nu1 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	411	0.5	15 - 116 220 - 528
2	61	1.17	117 - 219

Sequence

`___________________________________________________________________________________________________114__________________` `3srh(A) : QTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVE` `:` `6nu1(A) : QTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRT---------eVE` `___________________________________________________________________________________________________115__________________` `____________________________________________________________________________________219_________________________________` `3srh(A) : LKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHE` `:` `6nu1(A) : LKK----kITL-------cDENILWLDYKNI-------sKIYVDDGLISL--------------eNGGSLG-kKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHE` `____________________________________________________________________________________220_________________________________` `________________________________________________________________________________________________________________________` `3srh(A) : VRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLE` `:` `6nu1(A) : VRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3srh(A) : AVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFA` `:` `6nu1(A) : AVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFA` `________________________________________________________________________________________________________________________` `______________________________________` `3srh(A) : MNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP` `:` `6nu1(A) : MNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP` `______________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	12.5
Translation (A)	-0.2
Closure (%)	100.0
Bending Residues ( green )	114 - 117 219 - 225
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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