Redox-Sensing Transcriptional Repressor Rex

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Redox-Sensing Transcriptional Repressor Rex
  Conformer 1
(PDB) 		3keo (A)
  Conformer 2
(PDB) 		3keq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 127 0.92   79 - 209
2 64 0.57   8 - 78

Sequence


           _______________________________________________________________________78_______________________________________________ 
 3keo(A) : SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVG 
         :                                                                                                                          
 3keq(A) : SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGE-------yDVKKLMNFFAEILN---tTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVG 
           _______________________________________________________________________78_______________________________________________ 

           _______________________________________________________________________________________                                  
 3keo(A) : KTTEDGIPVYGISTINDHL-dSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR                                  
         :                                                                                                                          
 3keq(A) : KTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQ*                                  
           _______________________________________________________________________________________                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.4
Translation
(A) 		0.4
Closure
(%) 		8.8
Bending Residues
( green ) 		  78 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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