Ribosomal Protein L6

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosomal Protein L6
  Conformer 1
(PDB) 		1yl3 (H)
  Conformer 2
(PDB) 		1rl6 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 88 1.24   80 - 167
2 70 1.5   10 - 79

Sequence


           _______________________________________________________________________79_______________________________________________ 
 1yl3(H) : PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPS 
         :                                                                                                                          
 1rl6(A) : PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPS 
           _______________________________________________________________________79_______________________________________________ 

           ____________________________________________                                                                             
 1yl3(H) : QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL                                                                             
         :                                                                                                                          
 1rl6(A) : QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL                                                                             
           ____________________________________________                                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.1
Translation
(A) 		-0.1
Closure
(%) 		96.7
Bending Residues
( green ) 		  79 - 80
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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