Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Sugar-Binding Protein
  Conformer 1
(PDB) 		2heu (A)
  Conformer 2
(PDB) 		2hq0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 224 0.21   127 - 291   341 - 399
2 156 0.22   20 - 126   292 - 340

Sequence


           _________________________________________________________________________________________________________________126____ 
 2heu(A) : LFQGPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKIKvKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG 
         :                                                                                                                          
 2hq0(A) : ***GPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKiKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG 
           _________________________________________________________________________________________________________________113____ 

           ________________________________________________________________________________________________________________________ 
 2heu(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGD 
         :                                                                                                                          
 2hq0(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGD 
           ________________________________________________________________________________________________________________________ 

           ______________________________________291______________________________________________340______________________________ 
 2heu(A) : VLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEA 
         :                                                                                                                          
 2hq0(A) : VLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEA 
           ______________________________________278______________________________________________327______________________________ 

           _______________________________                                                                                          
 2heu(A) : DFHTLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                          
         :                                                                                                                          
 2hq0(A) : DFHTLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.0
Translation
(A) 		0.0
Closure
(%) 		99.3
Bending Residues
( green ) 		  126 - 127
  291 - 292
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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