Thermolysin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thermolysin
  Conformer 1
(PDB) 		8tln (E)
  Conformer 2
(PDB) 		1l3f (E)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 200 0.44   79 - 91   93 - 94   115 - 123   133 - 179   181 - 181   184 - 311
2 106 0.49   6 - 78   92 - 92   95 - 114   124 - 132   180 - 180   182 - 183

Sequence


           __________________________________________________________________________76________86_________________________114______ 
 8tln(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
         :                                                                                                                          
 1l3f(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
           __________________________________________________________________________76________86_________________________114______ 

           123______132____________________________________________179_____________________________________________________________ 
 8tln(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
         :                                                                                                                          
 1l3f(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
           123______132____________________________________________179_____________________________________________________________ 

           ____________________________________________________________________________                                             
 8tln(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
         :                                                                                                                          
 1l3f(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
           ____________________________________________________________________________                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.8
Translation
(A) 		0.0
Closure
(%) 		94.9
Bending Residues
( green ) 		  76 - 79
  86 - 95
  114 - 120
  123 - 124
  132 - 133
  179 - 184
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download