DynDom - Protein Domain Motions

Udp-N-Acetylglucosamine 1-Carboxyvinyl-Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-N-Acetylglucosamine 1-Carboxyvinyl-Transferase
Conformer 1 (PDB)	1naw (A)
Conformer 2 (PDB)	1naw (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	214	0.37	21 - 43 47 - 229 393 - 397 415 - 417
2	201	0.37	3 - 20 44 - 46 230 - 392 398 - 414

Sequence

`__________________20_____________________43_46__________________________________________________________________________` `1naw(A) : MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERNGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGAR` `:` `1naw(B) : MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERNGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGAR` `__________________20_____________________43_46__________________________________________________________________________` `__________________________________________________________________________________________________________229___________` `1naw(A) : PVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV` `:` `1naw(B) : PVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV` `__________________________________________________________________________________________________________229___________` `________________________________________________________________________________________________________________________` `1naw(A) : AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKL` `:` `1naw(B) : AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKL` `________________________________________________________________________________________________________________________` `_____________________________392__397_____________413______` `1naw(A) : SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE` `:` `1naw(B) : SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE` `_____________________________392__397_____________413______`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.6
Translation (A)	0.4
Closure (%)	84.4
Bending Residues ( green )	20 - 21 43 - 44 46 - 47 229 - 230 392 - 393 397 - 398 413 - 417
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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