Cytochrome P450-Cam

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome P450-Cam
  Conformer 1
(PDB) 		2cpp (A)
  Conformer 2
(PDB) 		4jx1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 291 0.71   12 - 94   100 - 120   133 - 158   252 - 412
2 110 1.09   95 - 99   121 - 132   159 - 251

Sequence


           _____________________________________________________________________________88_________99_________________119_________1 
 2cpp(A) : NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLEN 
         :                                                                                                                          
 4jx1(A) : NLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRSNGGHWIATRGQLIREAYEDYRHFSSESPFIPREAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLEN 
           _____________________________________________________________________________88_________99_________________119_________1 

           31________________________158__________________________________________________________________________________________2 
 2cpp(A) : RIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGG 
         :                                                                                                                          
 4jx1(A) : RIQELASSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGG 
           31________________________158__________________________________________________________________________________________2 

           51______________________________________________________________________________________________________________________ 
 2cpp(A) : LDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIV 
         :                                                                                                                          
 4jx1(A) : LDTVVNFLSFSMEFLAKSPEHRQELIERPERIPAASEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQCVSHTTFGHGSHLCLGQHLARREIIV 
           51______________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 2cpp(A) : TLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV                                                                            
         :                                                                                                                          
 4jx1(A) : TLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPATTKAV                                                                            
           _____________________________________________                                                                            

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.5
Translation
(A) 		-0.7
Closure
(%) 		70.0
Bending Residues
( green ) 		  88 - 95
  99 - 100
  119 - 121
  131 - 135
  158 - 159
  251 - 252
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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