Extracellular Solute-Binding Protein, Family 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Extracellular Solute-Binding Protein, Family 1
  Conformer 1
(PDB) 		6g7n (A)
  Conformer 2
(PDB) 		6g7q (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.27   8 - 84   89 - 103   204 - 211   236 - 274   285 - 286   301 - 317
2 152 0.15   85 - 88   104 - 203   212 - 235   275 - 284   287 - 300

Sequence


           _______________________________________________________________________________84__88____________103____________________ 
 6g7n(A) : GAINLYSSRHYDTDQALYDSFTKKTGLKVNLIEGKGDKLIERIKSEGANSPADVFMTVDAGRLWRAQEAGILQPISSSTLNNKIPANLRSPEKLWFGFSKRARVIMYNKNKVQPSELSTY 
         :                                                                                                                          
 6g7q(A) : GAINLYSSRHYDTDQALYDSFTKKTGLKVNLIEGKGDKLIERIKSEGANSPADVFMTVDAGRLWRAQEAGILQPISSSTLNNKIPANLRSPEKLWFGFSKRARVIMYNKNKVQPSELSTY 
           _______________________________________________________________________________84__88____________103____________________ 

           ___________________________________________________________________________201_______________________________235________ 
 6g7n(A) : EDLAQNKWKGKIVIRSSSNIYNQSLIASLIEIHGMSDAEGWAKGFVRNFARPPEGNDTAQIKAVAAGIGDIGLANSYYLARLKRSSKPEDQAVADKVGMFFPNQNGRGTHVNISGGGVVK 
         :                                                                                                                          
 6g7q(A) : EDLAQNKWKGKIVIRSSSNIYNQSLIASLIEIHGMSDAEGWAKGFVRNFARPPEGNDTAQIKAVAAGIGDIGLANSYYLARLKRSSKPEDQAVADKVGMFFPNQNGRGTHVNISGGGVVK 
           ___________________________________________________________________________201_______________________________235________ 

           ____________________________274_______284___________298_______________________                                           
 6g7n(A) : NAPNKEGAIKFLEYLVSPEAQKIFSEGNNEYPVVAGVPIASVLKPFGSFKNDSTNVSVYGKLNADAIKLMDRVGWKLE                                           
         :                                                                                                                          
 6g7q(A) : NAPNKEGAIKFLEYLVSPEAQKIFSEGNNEYPVVAGVPIASVLKPFGSFKNDSTNVSVYGKLNADAIKLMDRVGWKLE                                           
           ____________________________274_______284___________298_______________________                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.8
Translation
(A) 		0.0
Closure
(%) 		60.8
Bending Residues
( green ) 		  84 - 85
  88 - 89
  103 - 104
  201 - 217
  235 - 236
  274 - 275
  284 - 287
  298 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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