Igg1 Fab Fragment (Hc19)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igg1 Fab Fragment (Hc19)
  Conformer 1
(PDB) 		1q0x (L)
  Conformer 2
(PDB) 		1q0y (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 153 0.2   7 - 21   36 - 47   60 - 62   72 - 87   101 - 210
2 53 0.19   5 - 6   22 - 35   48 - 59   63 - 71   88 - 100

Sequence


           _____6____________21_______________35__________47__________59_62_______71______________87__________100__________________ 
 1q0x(L) : DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTL 
         :                                                                                                                          
 1q0y(L) : DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTL 
           _____6____________21_______________35__________47__________59_62_______71______________87__________100__________________ 

           ____________________________________________________________________________________________                             
 1q0x(L) : FPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLSRA                             
         :                                                                                                                          
 1q0y(L) : FPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLSRA                             
           ____________________________________________________________________________________________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.1
Translation
(A) 		0.0
Closure
(%) 		97.1
Bending Residues
( green ) 		  6 - 7
  21 - 22
  35 - 36
  47 - 48
  59 - 60
  62 - 63
  71 - 72
  87 - 88
  100 - 101
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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